| Date | Res | Opp | OW-OL | ||
| 11/21/2008 | L 67-72 | vs | Morgan St | 21-12 | |
| 11/22/2008 | L 66-72 | vs | UW Green Bay | 20-10 | |
| 11/23/2008 | L 78-82 | vs | Mississippi | 15-15 | |
| 11/29/2008 | W 68-64 | Old Dominion | 24-9 | ||
| 12/2/2008 | L 72-76 | East Tenn St | 20-11 | ||
| 12/6/2008 | W 84-80 | @ | Boston U | 17-12 | |
| 12/13/2008 | W 81-68 | UT Arlington | 13-13 | ||
| 12/17/2008 | W 73-68 | Ohio | 15-16 | ||
| 12/23/2008 | L 50-62 | @ | Dayton | 26-8 | |
| 12/28/2008 | W 74-60 | Tennessee St | 11-16 | ||
| 1/2/2009 | L 70-80 | @ | San Diego | 13-16 | |
| 1/7/2009 | L 57-80 | @ | Memphis | 32-4 | |
| 1/10/2009 | W 72-64 | East Carolina | 10-15 | ||
| 1/14/2009 | L 76-87 | vs | West Virginia | 22-12 | |
| 1/17/2009 | L 50-69 | @ | Tulsa | 22-11 | |
| 1/21/2009 | W 53-50 | SMU | 8-20 | ||
| 1/25/2009 | L 69-87 | @ | UCF | 15-13 | |
| 1/27/2009 | L 79-84 | @ | Southern Miss | 11-17 | |
| 1/31/2009 | L 73-75 OT | UAB | 20-12 | ||
| 2/4/2009 | L 57-73 | Tulsa | 22-11 | ||
| 2/7/2009 | W 89-86 OT | Tulane | 12-16 | ||
| 2/14/2009 | L 67-74 | @ | UTEP | 21-12 | |
| 2/18/2009 | W 88-83 | Houston | 21-11 | ||
| 2/21/2009 | L 51-57 | @ | Tulane | 12-16 | |
| 2/25/2009 | W 76-62 | @ | East Carolina | 10-15 | |
| 2/28/2009 | W 67-62 | UCF | 15-13 | ||
| 3/4/2009 | W 76-62 | Rice | 9-21 | ||
| 3/7/2009 | L 52-70 | @ | UAB | 20-12 | |
| 3/11/2009 | L 59-60 | vs | Rice | 9-21 | Conference USA |
| 12-17 | 398-302 |