| Date | Res | Opp | OW-OL | ||
| 11/14/2008 | L 46-60 | @ | South Florida | 8-22 | |
| 11/21/2008 | W 79-60 | Houston Baptist | 4-24 | ||
| 11/22/2008 | W 56-51 | Alabama St | 20-9 | ||
| 11/23/2008 | L 73-84 | Illinois St | 23-10 | ||
| 11/26/2008 | L 44-62 | @ | TCU | 12-17 | |
| 12/15/2008 | L 62-64 | UA Pine Bluff | 12-18 | ||
| 12/17/2008 | L 56-66 | @ | Texas A&M | 22-10 | |
| 12/23/2008 | L 55-66 | @ | Northwestern | 16-14 | |
| 12/29/2008 | L 75-80 | UT San Antonio | 15-13 | ||
| 12/31/2008 | W 92-62 | Texas A&M CC | 15-14 | ||
| 1/5/2009 | W 70-67 | Colorado | 8-21 | ||
| 1/10/2009 | L 68-74 | UTEP | 20-12 | ||
| 1/14/2009 | L 57-69 | @ | Rice | 9-21 | |
| 1/17/2009 | W 60-51 | Tulane | 13-16 | ||
| 1/21/2009 | L 50-53 | @ | Marshall | 11-17 | |
| 1/24/2009 | L 74-80 | East Carolina | 9-17 | ||
| 1/28/2009 | L 45-70 | @ | UCF | 15-14 | |
| 1/31/2009 | L 55-64 | @ | Tulsa | 22-11 | |
| 2/4/2009 | L 66-79 | Memphis | 31-4 | ||
| 2/7/2009 | W 73-56 | CS Bakersfield | 8-19 | ||
| 2/11/2009 | L 56-69 | Houston | 18-12 | ||
| 2/14/2009 | L 75-78 | @ | UAB | 21-12 | |
| 2/18/2009 | L 47-90 | @ | Memphis | 31-4 | |
| 2/21/2009 | W 69-66 | Rice | 9-21 | ||
| 2/25/2009 | L 58-61 OT | @ | UTEP | 20-12 | |
| 2/28/2009 | L 64-74 | Tulsa | 22-11 | ||
| 3/4/2009 | W 67-65 | Southern Miss | 12-16 | ||
| 3/7/2009 | L 77-89 | @ | Houston | 18-12 | |
| 3/11/2009 | L 76-85 | vs | Houston | 18-12 | Conference USA |
| 8-21 | 344-343 |